Open Lab

Open source software, datasets, and repositories developed by the VIDA lab. All resources are freely available for research and education.

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Software

3D Slicer

imaging

3D Slicer is an open source software platform for medical image informatics, image processing, and three-dimensional visualization.

medical-imagingvisualization

Open

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Software

ACHE

data-analysis

ACHE is a focused web crawler that collects web pages satisfying specific criteria using page classifiers.

web-crawlingmachine-learning

Open

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Software

AlphaD3M

data-analysis

An AutoML system that automatically searches for machine learning pipelines using reinforcement learning and neural architecture search.

automlmachine-learning

Open

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Software

Deformetrica

imaging

Deformetrica is a software for the statistical analysis of 2D and 3D shape data through deformation-based methods.

shape-analysismedical-imaging

Open

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Software

Domain Discovery Tool

data-analysis

DDT is an interactive system that helps users explore and better understand a domain as it is represented on the Web.

web-crawlingdata-discovery

Open

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Software

DTIPrep

imaging

DTIPrep performs automatic pipeline for DWI/DTI quality control and preparation with configurable processing steps.

medical-imagingquality-control

Open

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Software

ITK-SNAP

imaging

ITK-SNAP is a free, open-source, multi-platform software application used to segment structures in 3D medical images.

medical-imagingsegmentation

Open

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Software

ReproZip

data-analysis

ReproZip allows you to pack your research along with all necessary data files, libraries, environment variables and options for computational reproducibility.

reproducibilitypackaging

Open

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Software

Urban Mapper

visualization

A tool for mapping and analyzing urban environments using geospatial data and visualization techniques.

urban-computinggeospatial

Open

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Software

VisFlow

visualization

VisFlow is a web-based dataflow framework for visual data exploration with subset dataflow for interactive selection and manipulation.

visualizationdataflow

Open

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Software

VisTrails

visualization

VisTrails is an open-source scientific workflow and provenance management system that supports data exploration and visualization.

workflowprovenance

Open